PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv5_120720_czkq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 503aa    MW: 55659.8 Da    PI: 6.0843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv5_120720_czkq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.7e-13357404355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         ++h  +Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Bv5_120720_czkq.t1 357 MSHVLAERQRREKLNQRFYALRAVVPNiS------KMDKASLLLDAISYINDLQ 404
                         68999**********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-4548231IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.62E-18353418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.072354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.90E-14357407No hitNo description
PfamPF000101.8E-10357404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-18358419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-16360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MGHDSLLKDE DKVMVEAVVG KDAYNFLMST ACDDSLSEFN PPGDILNLQQ GLCQIVDGSS  60
WNYAIFWQIA SSKNGKAVLI WGDGHCRDPK AVVAREGLDG GNGKFGEVKN EGKKRVLEKL  120
HGCFGGSEED NFAATLDKVS DVEMLYLTSM YYWFRLDSSL GPAKSFTSGR SIWVSDVRSC  180
LDHYQSRAHL AKSAMFQTVV FVPVKTGVLE LGSVRTVMEE HSLVQMVKKI FGESQSFPAK  240
VSPKVFGRDL SLVTSRPRSM NISFAPKTED DASFSAESRV GASDIGAKHI YGSSSNGKHS  300
EQSDKRVFSE INFGGSNPES DFPALDEASE ELLLQAAELR ARKRPSRRPA SGREEAMSHV  360
LAERQRREKL NQRFYALRAV VPNISKMDKA SLLLDAISYI NDLQTKIGEL EAEKEVANPK  420
DESFEIPEID FQARQDDALV HVSFPLDAHP VSKVVKTLRE HQLVALEANV STKDDKMVHT  480
FTIRAQSDGA ENLKEKLEAA LSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-14482319192Transcription factor MYC3
4rqw_B6e-14482319192Transcription factor MYC3
4rs9_A6e-14482319192Transcription factor MYC3
4yz6_A6e-14482319192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679204.10.0PREDICTED: transcription factor bHLH3-like
TrEMBLA0A0J8F3J60.0A0A0J8F3J6_BETVU; Uncharacterized protein
STRINGPOPTR_0002s04310.11e-176(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-139bHLH family protein